I see. It's strange, as BD3D2MK3D can handle the DTS HD and MA tracks without problem.
Note that the core is extracted from the track during the demux process if the convert to AC3 or AAC option is not enabled, but it is not extracted if it is ticked (to keep the best audio quality possible before the conversion). When it is not extracted, the extension is not simply .dts, but .dtshd or .dtshdma. Maybe there is something wrong under your VM that prevents tsMuxeR to recognise these extensions, but I don't understand why. It would be interesting to check if it works without the convert to AC3 option.
BTW, can you post the XXXXX.demux.meta file here the next time you encounter the problem?
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