I think you've already tried increasing the cycle size for TDecimate, but have you tried giving it total discretion? You could try mode=7 first, but mode=2 on a second pass is sometimes a little better.
1st pass:
TFM(Output="TFM.txt")
TDecimate(Output="TDecimate.txt", Mode=4, rate=24.0/1.001)
2nd pass:
TFM(Input="TFM.txt")
TDecimate(Input="TDecimate.txt", Mode=2, TFMIn="TFM.txt", rate=24.0/1.001)
You sure it's not the broken cadence that causes TFM to create an extra duplicate frame when it has to rather than it being the other way around. If the cadence keeps changing, TFM can't do more than work with what it's given, so to speak.
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