i have used mkvmerge afterwards, yes, but havent tried that mixing up remuxed video and demuxed sound yet. not sure in how far mkvmerge does rewrite the timestamps automatically though, when I dont specify anything. I cant do that, because then, when I enter 23.976, 29.97 or this number in between which mpeg2repair sometimes reports (for example something like 24.53) the length is always wrong. it only works when I leave this field untouched.
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