Yes, the 2D mux proves only that the demux of the AVC stream worked fine. But I guess that the MVC stream is fine also. I don't think that it is possible to test the MVC stream without decoding it, and it's exactly that that doesn't work.
Last suggestion: try to re-download the latest version of BD3D2MK3D. Perhaps one of your files is corrupt. But I don't think that will help.
Unfortunately, I don't know what else should be tested now. According to the two error messages, it's probably something wrong with the Intel decoder (libmfxsw32.dll), but I don't know what. I have sent two PMs to knowledgeable peoples, in the hope that they will be able to help. I hope so!
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