Rempeg2 Hardball, Jerky Frames

[R-Brook]

I used ifoedit to strip out all the extras..
I used dvd2avi to demux the ac3
I used Remeg to encode the vobs to a m2v...

While playing the M2V file, some scenes have a very quick jerk every second or so...

I have used the same steps I listed above for Training Day & Iron Monkey, and all went well... What could be the problem... Is there a setting that I can change within Remeg that will correct this problem?

My setting for REmpeg are..
Bitrate 65%
Bit Allocation Adjust I=110%, P=100%, B=100%
Output Res = 720x576
Frame Mode = match source
Search Tec = Prediction
Half pel = checked
Brightness = 0
High Qual. Scale = checked
Integer DCT = checked
calculate psnr, show RC info, use Isse = Checked

[wedge]

This similar question has been talked about recently.Have included link to such.
http://forum.doom9.org/showthread.php?s=&threadid=22372
One thing to mention is we did not have this problem w/the M2v but after when remux together w/original vob's w/ifoedit.
Still have not found out why this is.Have left Rempeg for now to try Tmpg.
Lots of people here have good luck w/Rempeg but every project I have tried w/it have all had these little stutters.
Does anyone know how to remux back w/original vobs without using Ifoedit to see if that fixes it???