Well, if you close MeGUI, you'll find all the jobs as xml files in the jobs subdirectory. Open the job in question using notepad, and in it you'll find a line like this:
<Commandline>"mencoder.exe" "D:\DVDs\DVDVolume\VIDEO_TS\re-trailer.avs" -ovc x264 -x264encopts bitrate=700:subq=4:i4x4 -o "D:\DVDs\DVDVolume\VIDEO_TS\test.264" -of rawvideo </Commandline>
Copy everything in between <Commandline> and </Commandline>, then open a dos prompt and go to your MeGUI directory, paste that commandline, put "start /low " before it (so it'll look like this:
start /low "mencoder.exe" "D:\DVDs\DVDVolume\VIDEO_TS\re-trailer.avs" -ovc x264 -x264encopts bitrate=700:subq=4:i4x4 -o "D:\DVDs\DVDVolume\VIDEO_TS\test.264" -of rawvideo
) and see what you get. I'm sure speed will be roughly the same.
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