I had a similiar problem, backing up a movie using cce/ifoupdate.
Dvd shrink didn't open the resulting movie, and i solved with this method.
Try this and let us know if it worked.
Open problematic ifo with ifoedit.
Select vob extras, with options checked:
correct vob-unit
Correct original ifo files.
Ifoedit should correct the structure of the vob.
Bye
Mich
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