As long as there are no E32 errors, there is no reason to worry anyways (assuming that your CD-R is not a piece of crap, any scratch smaller than 2mm in "data direction" will not cause such errors).
Dat2file will read broken data if E32 errors occur, AVI-Mux GUI allows you to choose whether it shall stop when broken data is encountered, or whether you want to use even broken data.
You will never have "broken bits". The least number of broken bytes for a sector is none or three, but one or two is impossible (due to the error correction scheme of CDs).
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