You need mkvextract.exe (already in MeGUI package) and mp4fpsmod.exe like seems your ENCODED file is a mp4.
Download and extract in a new folder
mp4fpsmod_0.25.zip
At same folder put your ORIGINAL.mkv, your ENCODED.mp4 and a .bat file with this content:
Quote:
rem modify path to mkvextract
"D:\Programa\megui\tools\mkvmerge\mkvextract.exe" timecodes_v2 "ORIGINAL.mkv" 0:"timecodes.txt"
mp4fpsmod -t timecodes.txt -x -c "ENCODED.mp4" -o "SYNC.mp4"
pause
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Remember modify the path to your MeGUI folder.
Execute the bat file and verify if SYNC.mp4 is in sync.
I don't have now a VFR file to test myself.