[StainlessS]

Shall keep it in mind, however, there are I think visible on the main form,
two QUEUE buttons, a QUEUE-ANALYSIS PASS and also a QUEUE tab.
If I could guarantee only 1 instance of an item name then no problem
(eg VQUEUE, AQUEUE). MeGUI is in constant development
and as such things could easily move around and break the Batcher.
Because of the utility having to run on multiple OS (XP, Vista,W7)
and also MeGUI is not in any specific file location, makes it difficult
to identify which button to click, especially if there are eg 3 or 4
items ALL starting with "Queue", on a single system ie mine, no problem.
(there is a unique way to access a button, but it is based on some kind
of hash on the program file location as well as other stuff).
Suggest download AutoIt, if you can code in Avisynth, AutoIt should be
only a small step further. The code is well commented (and is debug version
in editor during interpretation) and should not be too difficult to modify.
I wrote a library of routines for the batchers, to make it easy to eg click
on a button (activate window, wait till active, bring window to front , move
mouse to button, focus on button, click on button, etc all in one command).
You would normally have to execute a load of "Sleep" commands to wait for
a length of time and hope it had happened by then.
EDIT: The whole 'active' sequence loop, where it controls MeGUI is only about
22-25 lines of code (with a debug line telling what it's about to do between each)
and so it would not be too difficult to change.

Could you please enlighten me as to what the problem is with AutoEncode.
You want queue both audio and video, but not mux?

EDIT: Re-reading, looks like you just want Video queued.
EDIT: Give me your reason and I shall try to get it going (no promises).