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based on what you've said of your workflow, you would do well to install AVFS (avisynth virtual file system) and pop the resulting uncompressed (and taking zero real space) file in your editing software to do cuts, fades, etc.
then export from there into anything you want.
this would be the fastest i think, bearing in mind i think it's your hard disk that's slowing things up, not your CPU.
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sucking the life out of your videos since 2004
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