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@imsrk48 - do you possibly confuse encoders with decoders?
MeGUI offers you FFMS2 (or L-SMASH Works, alternatively) per default in its "File Indexer" during the source selection. DirectShow decoding is disabled in recent versions, you would have to enable it manually.
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@LouieChuckyMerry: No guarantee, but batch audio processing with AviSynth base might be the domain of BeHappy, instead of MeGUI.
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