Pretty much the same here, mplayer crashes and I get nothing but black output from mencoder. I've tried the MPlayer-mingw32-dev-CVS-050928 build from mplayerhq.hu and CelticDruid builds from Aug, Nov and Jan 06. It could be the same problem as my filter: the quicktime function mplayer uses (ImageCodecBandDecompress) may not be able to handle B-Frames.
I'm using this as my config:
videocodec qth264
info "Win32/QuickTime h264"
status untested
fourcc H264,h264
fourcc avc1
driver qtvideo
dll "QuickTimeH264.qtx"
out YV12,I420,IYUV
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