you could always shoot on the D20 or D21...
failing that, shooting around the defect is pretty easy - many a feature film have been shot with rolling shutter. the trick is not to move the camera too fast, and avoid flashing lights as they'll show up halfway down a frame and give you computer style "screen tearing".
i'd love to see the foundry plug in action, but i reckon it probably does the same as the avisynth script above - foundry have a large number of plugs based on their mo-comping engine.
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