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I don't think you understood the problem.
Let's see some facts :
1) TSmuxer reads the chapters correctly
2) I DO keep the original MPLS because I want pop-up menu, I only replace the m2ts and clipinf files.
3) The resulting bluray has working menu but the timing problem mentioned.
Since the mpls is the original one! the problem lies with the m2ts file exported from TSmuxer I believe. The mpls and the m2ts are somehow connected in how chapters are handled, so using the NEW m2ts with the original mpls does not "sync" as far as chapters go.
Using the new mpls kind of works, because I guess the timming screw-up TSmuxer does to the m2ts file, is also done to the mpls, so they sync....but hten you get no menu....
So, the way I see it, the solution is not to tinker with the mpls, since its the original one anyway, its to tinker with the resulting M2TS filr from tsmuxer so it comes out "correctly".
Here is the example of my movie testing. The movie is Wedding Crashers Uncorked edition.
I ran the mpls files through a program that reads them and here is the result :
Original MPLS :
File Size: 586 bytes
Time_IN 00:00:11.651
Time_OUT 02:07:12.431
Duration 02:07:00.780
CH 0 00:00:11.651
CH 1 00:03:51.203
CH 2 00:15:36.616
CH 3 00:23:58.451
CH 4 00:39:22.416
CH 5 00:44:12.873
CH 6 00:49:31.733
CH 7 00:53:02.694
CH 8 00:59:24.241
CH 9 01:06:34.296
CH 10 01:12:12.968
CH 11 01:19:16.808
CH 12 01:22:07.729
CH 13 01:26:31.158
CH 14 01:29:04.604
CH 15 01:35:30.239
CH 16 01:41:19.170
CH 17 01:48:06.536
CH 18 01:53:30.776
CH 19 02:01:01.268
CH 20 02:07:12.180
TSMuxer output MPLS :
File Size: 530 bytes
Time_IN 00:10:00.000
Time_OUT 02:17:00.768
Duration 02:07:00.768
CH 0 00:10:00.000
CH 1 00:13:39.552
CH 2 00:25:24.965
CH 3 00:33:46.800
CH 4 00:49:10.765
CH 5 00:54:01.221
CH 6 00:59:20.082
CH 7 01:02:51.042
CH 8 01:09:12.590
CH 9 01:16:22.645
CH 10 01:22:01.317
CH 11 01:29:05.157
CH 12 01:31:56.077
CH 13 01:36:19.507
CH 14 01:38:52.952
CH 15 01:45:18.587
CH 16 01:51:07.519
CH 17 01:57:54.885
CH 18 02:03:19.125
CH 19 02:10:49.617
CH 20 02:17:00.529
My understanding is, that the treatment done from tsmuxer to the output mpls, is also done to the output m2ts file and thus when those 2 are used together they work fine. But using the new m2ts with the old mpls that has correct timmings obviously does not work...
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