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Originally Posted by kai0n7
Hope its something simple.
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Not simple, but not too hard. libavcodec drops nondecodable orphaned frames while CUDA does not. I needed to allow for that difference. It will happen only with open GOPs, so you must have the Treat I as IDR option enabled. If you disable that it won't happen. Anyway, I have fixed it and will release it soon. Thank you for your trouble report.