The content of the chapter editor are not written to the output file when you start muxing in mmg. Yes, it's a bad design, but that's the way it is at the moment. Think of the chapter editor as a separate program. Save the chapters to a XML file, chose that XML file in the "global" tab and mux it.
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Latest MKVToolNix is v83.0
If I ever ask you to upload something, please use my file server.
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