I think there's a bug in MeGUI that's been going on since 0.2.2.9a. When configuring the first pass in a 2-pass encode, after selecting a custom matrix the "Video Output" option gets greyed out, and so does the dropdown box with the Mode selection. Any idea why this happens? The only workaround I found is: configure the 1st pass as normal, queue it, close MeGUI, open it again, configure the second pass, queue it and start the encoding.
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