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Originally Posted by Sirber
....The only solution for your problem is:
1) Reencode and output to raw h264
2) use avc2avi or mp4box to merge in another container.
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For those who may be interested..... I've recently been in contact with Alexander Noé regarding adding RAW H.264 stream support to AVI-Mux GUI, as his application already handles MPEG-4/AVC streams in .AVI and MKV.
Cheers