Any chance you can compress your source & repeat the tests with that material? Then if they're still the same, which one would expect, upload the source somewhere?
I've only experimented with SetMTMode(2,0) but have now tried interlaced sources; still can't find a difference between SetMT & no SetMT.
/grasping at straws
Are you using the latest versions of the filters?
MT 0.7 1/3/7 and mvtools 1.8.4 22/8/7 here.
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