No, tsmuxer is not interfering with them. I've tried personally that part, keeping the original clpi and the original mpls.
Quote:
Originally Posted by deank
You can extract/demux IGS with tsRemux. The stream describes all buttons, HDMV navigational commands to be executed when buttons are activated/clicked, sounds, menu pages and in the end, RLE encoded representations of all button/popup graphics. There is no difference between menu IGS and pop-up IGS.
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But there is no muxer to put them together again.
As for your problem, can you post screenshots of the entire BD structure that you have ? Listed, not pictures of folders. Maybe I can see where the problem lies.
Some more information
here and
here.