Quote:
Originally Posted by netmask
I have played with MKVToolNix but I always end up with one big file all titles being appended rather than as separate files
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It depends on your setting.
"MKVToolNix GUI"->"Preferences (Ctrl+P)"->"Multiplexer"->"When dropping files". There you can set to create new multiplex for each file or ask every time (when using drag&drop). Then you can add 100 files, click "Multiplexer"->"Actions for all tabs"->"Start multiplexing".
Note that this will only change the container, not re-encode to more modern codecs. To do the latter you need a software like the mentioned StaxRip. You didn't say why you want to convert to mkv.